J3_6FEC_008
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6FEC|1|A|G|1252, 6FEC|1|A|A|1254
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_008 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.2765
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FEC|1|A|C|1233
6FEC|1|A|U|1234
6FEC|1|A|U|1235
6FEC|1|A|A|1236
6FEC|1|A|A|1237
6FEC|1|A|U|1238
6FEC|1|A|U|1239
6FEC|1|A|U|1240
*
6FEC|1|A|G|1251
6FEC|1|A|G|1252
6FEC|1|A|G|1253
6FEC|1|A|A|1254
6FEC|1|A|A|1255
6FEC|1|A|A|1256
6FEC|1|A|C|1257
6FEC|1|A|C|1258
6FEC|1|A|U|1259
6FEC|1|A|C|1260
6FEC|1|A|A|1261
6FEC|1|A|C|1262
*
6FEC|1|A|G|1511
6FEC|1|A|G|1512
6FEC|1|A|C|1513
6FEC|1|A|U|1514
6FEC|1|A|G|1515
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein S29
- Chain L
- 40S ribosomal protein S18
- Chain h
- 40S ribosomal protein S20
- Chain n
- 40S ribosomal protein S15
- Chain p
- Ubiquitin-40S ribosomal protein S27a
- Chain t
- 40S ribosomal protein S10
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