J3_6FRK_002
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UC*GCCUAAGG*CG
- Length
- 12 nucleotides
- Bulged bases
- 6FRK|1|1|C|169, 6FRK|1|1|A|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FRK_002 not in the Motif Atlas
- Geometric match to J3_1MFQ_002
- Geometric discrepancy: 0.2799
- The information below is about J3_1MFQ_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70599.1
- Basepair signature
- cWW-F-cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
6FRK|1|1|U|128
6FRK|1|1|C|129
*
6FRK|1|1|G|168
6FRK|1|1|C|169
6FRK|1|1|C|170
6FRK|1|1|U|171
6FRK|1|1|A|172
6FRK|1|1|A|173
6FRK|1|1|G|174
6FRK|1|1|G|175
*
6FRK|1|1|C|221
6FRK|1|1|G|222
Current chains
- Chain 1
- Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA
Nearby chains
- Chain u
- Signal recognition particle subunit SRP68
Coloring options: