J3_6FRK_015
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FRK_015 not in the Motif Atlas
- Geometric match to J3_7A0S_009
- Geometric discrepancy: 0.3722
- The information below is about J3_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FRK|1|5|C|3937
6FRK|1|5|G|3938
6FRK|1|5|G|3939
*
6FRK|1|5|C|4074
6FRK|1|5|U|4075
6FRK|1|5|G|4076
6FRK|1|5|A|4077
6FRK|1|5|C|4078
*
6FRK|1|5|G|4168
6FRK|1|5|G|4169
6FRK|1|5|A|4170
6FRK|1|5|C|4171
6FRK|1|5|A|4172
6FRK|1|5|G|4173
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- Ribosomal protein eL8
- Chain N
- Ribosomal protein L15
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