3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUC*GAG*CAAAAG
Length
12 nucleotides
Bulged bases
6FRK|1|5|A|4280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FRK_018 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.1556
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|C|4241
6FRK|1|5|U|4242
6FRK|1|5|C|4243
*
6FRK|1|5|G|4267
6FRK|1|5|A|4268
6FRK|1|5|G|4269
*
6FRK|1|5|C|4278
6FRK|1|5|A|4279
6FRK|1|5|A|4280
6FRK|1|5|A|4281
6FRK|1|5|A|4282
6FRK|1|5|G|4283

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
Ribosomal protein uL18
Chain J
Ribosomal protein uL5
Chain T
Ribosomal protein eL21

Coloring options:


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