3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
CUC*GAG*CAAAAG
Length
12 nucleotides
Bulged bases
6FTG|1|u|A|4280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FTG_013 not in the Motif Atlas
Homologous match to J3_5TBW_013
Geometric discrepancy: 0.129
The information below is about J3_5TBW_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6FTG|1|u|C|4241
6FTG|1|u|U|4242
6FTG|1|u|C|4243
*
6FTG|1|u|G|4267
6FTG|1|u|A|4268
6FTG|1|u|G|4269
*
6FTG|1|u|C|4278
6FTG|1|u|A|4279
6FTG|1|u|A|4280
6FTG|1|u|A|4281
6FTG|1|u|A|4282
6FTG|1|u|G|4283

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain J
Ribosomal protein L11
Chain T
eL21
Chain v
5S ribosomal RNA; 5S rRNA

Coloring options:


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