J3_6FXC_017

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

6FXC|1|Aa|U|880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1396

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6FXC|1|Aa|C|834
6FXC|1|Aa|U|835
6FXC|1|Aa|A|836
6FXC|1|Aa|A|837
*
6FXC|1|Aa|U|866
6FXC|1|Aa|G|867
6FXC|1|Aa|C|868
6FXC|1|Aa|A|869
6FXC|1|Aa|G|870
*
6FXC|1|Aa|C|877
6FXC|1|Aa|A|878
6FXC|1|Aa|U|879
6FXC|1|Aa|U|880
6FXC|1|Aa|A|881
6FXC|1|Aa|A|882
6FXC|1|Aa|G|883

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ab

30S ribosomal protein S2

Chain Ah

30S ribosomal protein S8