J3_6FXC_043

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_043 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1822

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6FXC|1|Ba|U|952
6FXC|1|Ba|G|953
6FXC|1|Ba|G|954
6FXC|1|Ba|A|955
*
6FXC|1|Ba|U|1245
6FXC|1|Ba|A|1246
6FXC|1|Ba|C|1247
*
6FXC|1|Ba|G|1347
6FXC|1|Ba|G|1348
6FXC|1|Ba|A|1349
6FXC|1|Ba|A|1350

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bi

30S ribosomal protein S9

Chain Bm

30S ribosomal protein S13

Chain Bv

Ribosome hibernation promotion factor