J3_6FXC_048

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

6FXC|1|Ba|U|1250, 6FXC|1|Ba|A|1309, 6FXC|1|Ba|U|1311, 6FXC|1|Ba|U|1312

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_048 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.4547

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6FXC|1|Ba|C|1247
6FXC|1|Ba|A|1248
6FXC|1|Ba|A|1249
6FXC|1|Ba|U|1250
6FXC|1|Ba|G|1251
*
6FXC|1|Ba|C|1306
6FXC|1|Ba|U|1307
6FXC|1|Ba|C|1308
6FXC|1|Ba|A|1309
6FXC|1|Ba|G|1310
6FXC|1|Ba|U|1311
6FXC|1|Ba|U|1312
6FXC|1|Ba|C|1313
*
6FXC|1|Ba|G|1344
6FXC|1|Ba|C|1345
6FXC|1|Ba|U|1346
6FXC|1|Ba|G|1347

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bg

30S ribosomal protein S7

Chain Bm

30S ribosomal protein S13