J3_6FXC_049

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GC*GUGAAAAGCAC*GAGUGAAAUAGAACC

Length

28 nucleotides

Bulged bases

6FXC|1|AA|U|549, 6FXC|1|AA|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_049 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.1184

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6FXC|1|AA|G|30
6FXC|1|AA|C|31
*
6FXC|1|AA|G|520
6FXC|1|AA|U|521
6FXC|1|AA|G|522
6FXC|1|AA|A|523
6FXC|1|AA|A|524
6FXC|1|AA|A|525
6FXC|1|AA|A|526
6FXC|1|AA|G|527
6FXC|1|AA|C|528
6FXC|1|AA|A|529
6FXC|1|AA|C|530
*
6FXC|1|AA|G|541
6FXC|1|AA|A|542
6FXC|1|AA|G|543
6FXC|1|AA|U|544
6FXC|1|AA|G|545
6FXC|1|AA|A|546
6FXC|1|AA|A|547
6FXC|1|AA|A|548
6FXC|1|AA|U|549
6FXC|1|AA|A|550
6FXC|1|AA|G|551
6FXC|1|AA|A|552
6FXC|1|AA|A|553
6FXC|1|AA|C|554
6FXC|1|AA|C|555

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AO

50S ribosomal protein L20

Chain AQ

50S ribosomal protein L22

Chain AS

50S ribosomal protein L24