J3_6FXC_057

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

6FXC|1|Aa|U|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_057 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2155

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|Aa|C|999
6FXC|1|Aa|U|1000
6FXC|1|Aa|U|1001
6FXC|1|Aa|G|1002
6FXC|1|Aa|A|1003
6FXC|1|Aa|C|1004
6FXC|1|Aa|A|1005
6FXC|1|Aa|U|1006
*
6FXC|1|Aa|A|1055
6FXC|1|Aa|C|1056
6FXC|1|Aa|A|1057
6FXC|1|Aa|G|1058
*
6FXC|1|Aa|C|1220
6FXC|1|Aa|U|1221
6FXC|1|Aa|U|1222
6FXC|1|Aa|A|1223
6FXC|1|Aa|U|1224
6FXC|1|Aa|G|1225

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain An

30S ribosomal protein S14 type Z