3D structure

PDB id
6FXC (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
6.76 Å

Loop

Sequence
CUUGACAU*ACAG*CUUAUG
Length
18 nucleotides
Bulged bases
6FXC|1|Aa|U|1224
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FXC_057 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.2155
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6FXC|1|Aa|C|999
6FXC|1|Aa|U|1000
6FXC|1|Aa|U|1001
6FXC|1|Aa|G|1002
6FXC|1|Aa|A|1003
6FXC|1|Aa|C|1004
6FXC|1|Aa|A|1005
6FXC|1|Aa|U|1006
*
6FXC|1|Aa|A|1055
6FXC|1|Aa|C|1056
6FXC|1|Aa|A|1057
6FXC|1|Aa|G|1058
*
6FXC|1|Aa|C|1220
6FXC|1|Aa|U|1221
6FXC|1|Aa|U|1222
6FXC|1|Aa|A|1223
6FXC|1|Aa|U|1224
6FXC|1|Aa|G|1225

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain An
30S ribosomal protein S14 type Z

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7608 s