J3_6GQB_028
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6GQB|1|2|U|1473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQB_028 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.5588
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6GQB|1|2|C|1470
6GQB|1|2|A|1471
6GQB|1|2|C|1472
6GQB|1|2|U|1473
6GQB|1|2|G|1474
*
6GQB|1|2|C|1533
6GQB|1|2|G|1534
6GQB|1|2|U|1535
6GQB|1|2|G|1536
6GQB|1|2|C|1537
6GQB|1|2|U|1538
6GQB|1|2|G|1539
6GQB|1|2|G|1540
*
6GQB|1|2|C|1571
6GQB|1|2|G|1572
6GQB|1|2|A|1573
6GQB|1|2|G|1574
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AI
- 40S ribosomal protein S18-A
- Chain AJ
- 40S ribosomal protein S19-A
- Chain AP
- 40S ribosomal protein S25-A
- Chain v
- 40S ribosomal protein S5
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