J3_6GZ4_046

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6GZ4|1|B1|G|1274, 6GZ4|1|B1|G|1507, 6GZ4|1|B1|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_046 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1731

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6GZ4|1|B1|C|1272
6GZ4|1|B1|C|1273
6GZ4|1|B1|G|1274
6GZ4|1|B1|G|1275
6GZ4|1|B1|A|1276
6GZ4|1|B1|C|1277
*
6GZ4|1|B1|G|1320
6GZ4|1|B1|G|1321
6GZ4|1|B1|G|1322
6GZ4|1|B1|U|1323
6GZ4|1|B1|G|1324
*
6GZ4|1|B1|U|1504
6GZ4|1|B1|U|1505
6GZ4|1|B1|A|1506
6GZ4|1|B1|G|1507
6GZ4|1|B1|A|1508
6GZ4|1|B1|U|1509
6GZ4|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

ribosomal protein eS10

Chain Bd

ribosomal protein uS14

Chain Bf

ribosomal protein eS31

Chain Ct

eukaryotic elongation factor 2 (eEF2)