J3_6GZX_033

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6GZX|1|A2|C|34, 6GZX|1|A2|U|476, 6GZX|1|A2|C|479, 6GZX|1|A2|C|481, 6GZX|1|A2|C|484, 6GZX|1|A2|U|487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZX_033 not in the Motif Atlas

Homologous match to J3_4WF9_012

Geometric discrepancy: 0.3384

The information below is about J3_4WF9_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

6GZX|1|A2|C|32
6GZX|1|A2|U|33
6GZX|1|A2|C|34
6GZX|1|A2|G|35
*
6GZX|1|A2|C|473
6GZX|1|A2|G|474
6GZX|1|A2|A|475
6GZX|1|A2|U|476
6GZX|1|A2|A|477
6GZX|1|A2|G|478
6GZX|1|A2|C|479
6GZX|1|A2|G|480
6GZX|1|A2|C|481
6GZX|1|A2|A|482
6GZX|1|A2|C|483
6GZX|1|A2|C|484
6GZX|1|A2|A|485
6GZX|1|A2|G|486
6GZX|1|A2|U|487
6GZX|1|A2|A|488
6GZX|1|A2|C|489
*
6GZX|1|A2|G|496
6GZX|1|A2|G|497
6GZX|1|A2|A|498
6GZX|1|A2|A|499
6GZX|1|A2|A|500
6GZX|1|A2|G|501

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain P2

50S ribosomal protein L20

Chain S2

50S ribosomal protein L23

Chain c2

50S ribosomal protein L34