J3_6GZZ_040
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CCUCG*CGAUAGCGCACCAGUAC*GGAAAGG
- Length
- 29 nucleotides
- Bulged bases
- 6GZZ|1|A2|C|34, 6GZZ|1|A2|U|476, 6GZZ|1|A2|C|479, 6GZZ|1|A2|C|483, 6GZZ|1|A2|C|484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZZ_040 not in the Motif Atlas
- Homologous match to J3_4WF9_012
- Geometric discrepancy: 0.5503
- The information below is about J3_4WF9_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6GZZ|1|A2|C|31
6GZZ|1|A2|C|32
6GZZ|1|A2|U|33
6GZZ|1|A2|C|34
6GZZ|1|A2|G|35
*
6GZZ|1|A2|C|473
6GZZ|1|A2|G|474
6GZZ|1|A2|A|475
6GZZ|1|A2|U|476
6GZZ|1|A2|A|477
6GZZ|1|A2|G|478
6GZZ|1|A2|C|479
6GZZ|1|A2|G|480
6GZZ|1|A2|C|481
6GZZ|1|A2|A|482
6GZZ|1|A2|C|483
6GZZ|1|A2|C|484
6GZZ|1|A2|A|485
6GZZ|1|A2|G|486
6GZZ|1|A2|U|487
6GZZ|1|A2|A|488
6GZZ|1|A2|C|489
*
6GZZ|1|A2|G|496
6GZZ|1|A2|G|497
6GZZ|1|A2|A|498
6GZZ|1|A2|A|499
6GZZ|1|A2|A|500
6GZZ|1|A2|G|501
6GZZ|1|A2|G|502
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain E2
- 50S ribosomal protein L4
- Chain P2
- 50S ribosomal protein L20
- Chain S2
- 50S ribosomal protein L23
- Chain c2
- 50S ribosomal protein L34
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