3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
CCUCG*CGAUAGCGCACCAGUAC*GGAAAGG
Length
29 nucleotides
Bulged bases
6GZZ|1|A2|C|34, 6GZZ|1|A2|U|476, 6GZZ|1|A2|C|479, 6GZZ|1|A2|C|483, 6GZZ|1|A2|C|484
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GZZ_040 not in the Motif Atlas
Homologous match to J3_4WF9_012
Geometric discrepancy: 0.5503
The information below is about J3_4WF9_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6GZZ|1|A2|C|31
6GZZ|1|A2|C|32
6GZZ|1|A2|U|33
6GZZ|1|A2|C|34
6GZZ|1|A2|G|35
*
6GZZ|1|A2|C|473
6GZZ|1|A2|G|474
6GZZ|1|A2|A|475
6GZZ|1|A2|U|476
6GZZ|1|A2|A|477
6GZZ|1|A2|G|478
6GZZ|1|A2|C|479
6GZZ|1|A2|G|480
6GZZ|1|A2|C|481
6GZZ|1|A2|A|482
6GZZ|1|A2|C|483
6GZZ|1|A2|C|484
6GZZ|1|A2|A|485
6GZZ|1|A2|G|486
6GZZ|1|A2|U|487
6GZZ|1|A2|A|488
6GZZ|1|A2|C|489
*
6GZZ|1|A2|G|496
6GZZ|1|A2|G|497
6GZZ|1|A2|A|498
6GZZ|1|A2|A|499
6GZZ|1|A2|A|500
6GZZ|1|A2|G|501
6GZZ|1|A2|G|502

Current chains

Chain A2
23S ribosomal RNA

Nearby chains

Chain E2
50S ribosomal protein L4
Chain P2
50S ribosomal protein L20
Chain S2
50S ribosomal protein L23
Chain c2
50S ribosomal protein L34

Coloring options:


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