J3_6GZZ_055
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 6GZZ|1|B1|C|14, 6GZZ|1|B1|U|16, 6GZZ|1|B1|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZZ_055 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.3585
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GZZ|1|B1|C|13
6GZZ|1|B1|C|14
6GZZ|1|B1|A|15
6GZZ|1|B1|U|16
6GZZ|1|B1|A|17
6GZZ|1|B1|G|18
*
6GZZ|1|B1|C|70
6GZZ|1|B1|G|71
*
6GZZ|1|B1|U|110
6GZZ|1|B1|C|111
6GZZ|1|B1|G|112
Current chains
- Chain B1
- 5S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain N1
- 50S ribosomal protein L18
- Chain U1
- 50S ribosomal protein L25
- Chain V1
- 50S ribosomal protein L27
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