J3_6H58_044

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6H58|1|aa|U|871, 6H58|1|aa|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H58_044 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0691

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6H58|1|aa|C|826
6H58|1|aa|U|827
6H58|1|aa|U|828
6H58|1|aa|G|829
*
6H58|1|aa|C|857
6H58|1|aa|G|858
6H58|1|aa|G|859
6H58|1|aa|A|860
6H58|1|aa|G|861
*
6H58|1|aa|C|868
6H58|1|aa|G|869
6H58|1|aa|U|870
6H58|1|aa|U|871
6H58|1|aa|A|872
6H58|1|aa|A|873
6H58|1|aa|G|874

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain bb

30S ribosomal protein S2

Chain hh

30S ribosomal protein S8

Chain uu

30S ribosomal protein S21