J3_6HA1_018

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

6HA1|1|a|U|881

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_018 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1346

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6HA1|1|a|C|835
6HA1|1|a|U|836
6HA1|1|a|A|837
6HA1|1|a|A|838
*
6HA1|1|a|U|867
6HA1|1|a|G|868
6HA1|1|a|C|869
6HA1|1|a|A|870
6HA1|1|a|G|871
*
6HA1|1|a|C|878
6HA1|1|a|A|879
6HA1|1|a|U|880
6HA1|1|a|U|881
6HA1|1|a|A|882
6HA1|1|a|A|883
6HA1|1|a|G|884

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8