J3_6HA1_027
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 6HA1|1|a|U|1249, 6HA1|1|a|U|1311
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_027 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1418
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
6HA1|1|a|C|1246
6HA1|1|a|A|1247
6HA1|1|a|A|1248
6HA1|1|a|U|1249
6HA1|1|a|G|1250
*
6HA1|1|a|C|1305
6HA1|1|a|U|1306
6HA1|1|a|C|1307
6HA1|1|a|A|1308
6HA1|1|a|G|1309
6HA1|1|a|U|1310
6HA1|1|a|U|1311
6HA1|1|a|C|1312
*
6HA1|1|a|G|1343
6HA1|1|a|C|1344
6HA1|1|a|U|1345
6HA1|1|a|G|1346
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
Coloring options: