J3_6HA1_028
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 6HA1|1|A|G|550, 6HA1|1|A|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_028 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2281
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6HA1|1|A|G|30
6HA1|1|A|C|31
*
6HA1|1|A|G|521
6HA1|1|A|U|522
6HA1|1|A|G|523
6HA1|1|A|A|524
6HA1|1|A|A|525
6HA1|1|A|A|526
6HA1|1|A|A|527
6HA1|1|A|G|528
6HA1|1|A|C|529
6HA1|1|A|A|530
6HA1|1|A|C|531
*
6HA1|1|A|G|542
6HA1|1|A|A|543
6HA1|1|A|G|544
6HA1|1|A|U|545
6HA1|1|A|G|546
6HA1|1|A|A|547
6HA1|1|A|A|548
6HA1|1|A|A|549
6HA1|1|A|G|550
6HA1|1|A|A|551
6HA1|1|A|G|552
6HA1|1|A|A|553
6HA1|1|A|U|554
6HA1|1|A|C|555
6HA1|1|A|C|556
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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