J3_6HA1_029
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6HA1|1|A|U|34, 6HA1|1|A|U|495, 6HA1|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_029 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0947
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6HA1|1|A|C|32
6HA1|1|A|U|33
6HA1|1|A|U|34
6HA1|1|A|G|35
*
6HA1|1|A|C|492
6HA1|1|A|G|493
6HA1|1|A|A|494
6HA1|1|A|U|495
6HA1|1|A|A|496
6HA1|1|A|G|497
6HA1|1|A|U|498
6HA1|1|A|G|499
6HA1|1|A|A|500
6HA1|1|A|A|501
6HA1|1|A|C|502
6HA1|1|A|C|503
6HA1|1|A|A|504
6HA1|1|A|G|505
6HA1|1|A|U|506
6HA1|1|A|A|507
6HA1|1|A|C|508
*
6HA1|1|A|G|515
6HA1|1|A|G|516
6HA1|1|A|A|517
6HA1|1|A|A|518
6HA1|1|A|A|519
6HA1|1|A|G|520
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
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