J3_6HA1_032

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_032 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.09

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HA1|1|A|G|1470
6HA1|1|A|G|1471
6HA1|1|A|G|1472
6HA1|1|A|A|1473
6HA1|1|A|C|1474
6HA1|1|A|G|1475
*
6HA1|1|A|C|1612
6HA1|1|A|C|1613
*
6HA1|1|A|G|1616
6HA1|1|A|A|1617
6HA1|1|A|A|1618
6HA1|1|A|A|1619
6HA1|1|A|A|1620
6HA1|1|A|G|1621
6HA1|1|A|C|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2