J3_6HA1_035
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6HA1|1|a|C|50, 6HA1|1|a|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_035 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0942
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HA1|1|a|G|48
6HA1|1|a|C|49
6HA1|1|a|C|50
6HA1|1|a|U|51
6HA1|1|a|A|52
6HA1|1|a|A|53
6HA1|1|a|U|54
*
6HA1|1|a|A|367
6HA1|1|a|G|368
6HA1|1|a|G|369
6HA1|1|a|G|370
6HA1|1|a|A|371
6HA1|1|a|A|372
6HA1|1|a|U|373
6HA1|1|a|C|374
6HA1|1|a|U|375
*
6HA1|1|a|A|401
6HA1|1|a|G|402
6HA1|1|a|C|403
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
Coloring options: