J3_6HA1_036
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6HA1|1|a|U|662
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_036 not in the Motif Atlas
- Homologous match to J3_5J7L_051
- Geometric discrepancy: 0.1296
- The information below is about J3_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HA1|1|a|C|595
6HA1|1|a|G|596
6HA1|1|a|G|597
*
6HA1|1|a|C|660
6HA1|1|a|U|661
6HA1|1|a|U|662
6HA1|1|a|G|663
6HA1|1|a|A|664
*
6HA1|1|a|U|760
6HA1|1|a|G|761
6HA1|1|a|A|762
6HA1|1|a|C|763
6HA1|1|a|G|764
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
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