J3_6HCF_012
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6HCF|1|A1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCF_012 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.1486
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCF|1|A1|A|938
6HCF|1|A1|U|939
6HCF|1|A1|U|940
6HCF|1|A1|C|941
*
6HCF|1|A1|G|985
6HCF|1|A1|G|986
6HCF|1|A1|A|987
6HCF|1|A1|C|988
6HCF|1|A1|C|989
6HCF|1|A1|A|990
6HCF|1|A1|G|991
6HCF|1|A1|A|992
6HCF|1|A1|G|993
*
6HCF|1|A1|C|1000
6HCF|1|A1|A|1001
6HCF|1|A1|U|1002
6HCF|1|A1|U|1003
6HCF|1|A1|U|1004
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain C1
- 40S ribosomal protein S3a
- Chain P1
- uS11
- Chain b1
- eS26
- Chain p3
- eL43
Coloring options: