J3_6HCF_014
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCF_014 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1707
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HCF|1|A1|U|1225
6HCF|1|A1|G|1226
6HCF|1|A1|G|1227
6HCF|1|A1|A|1228
*
6HCF|1|A1|U|1530
6HCF|1|A1|A|1531
6HCF|1|A1|C|1532
*
6HCF|1|A1|G|1638
6HCF|1|A1|G|1639
6HCF|1|A1|A|1640
6HCF|1|A1|A|1641
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain G1
- Ribosomal protein S5
- Chain R1
- Ribosomal protein S16
- Chain T1
- uS13
- Chain U1
- eS19
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