J3_6HCJ_006

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6HCJ|1|51|U|2788, 6HCJ|1|51|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCJ_006 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.3106

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6HCJ|1|51|G|2402
6HCJ|1|51|A|2403
6HCJ|1|51|A|2404
6HCJ|1|51|G|2405
*
6HCJ|1|51|C|2785
6HCJ|1|51|C|2786
6HCJ|1|51|A|2787
6HCJ|1|51|U|2788
6HCJ|1|51|A|2789
6HCJ|1|51|U|2790
6HCJ|1|51|C|2791
*
6HCJ|1|51|G|2800
6HCJ|1|51|U|2801
6HCJ|1|51|C|2802

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain l3

eL39