3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GAAG*CCAUAUC*GUC
Length
14 nucleotides
Bulged bases
6HCJ|1|51|U|2788, 6HCJ|1|51|A|2789
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HCJ_006 not in the Motif Atlas
Homologous match to J3_5TBW_009
Geometric discrepancy: 0.3106
The information below is about J3_5TBW_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_74051.1
Basepair signature
cWW-tSH-tWW-tHW-F-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6HCJ|1|51|G|2402
6HCJ|1|51|A|2403
6HCJ|1|51|A|2404
6HCJ|1|51|G|2405
*
6HCJ|1|51|C|2785
6HCJ|1|51|C|2786
6HCJ|1|51|A|2787
6HCJ|1|51|U|2788
6HCJ|1|51|A|2789
6HCJ|1|51|U|2790
6HCJ|1|51|C|2791
*
6HCJ|1|51|G|2800
6HCJ|1|51|U|2801
6HCJ|1|51|C|2802

Current chains

Chain 51
28S ribosomal RNA

Nearby chains

Chain g3
eL34
Chain j3
Ribosomal protein L37
Chain l3
eL39

Coloring options:


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