3D structure

PDB id
6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCAG*CCAGUAA*UGAUUAAG
Length
19 nucleotides
Bulged bases
6HCJ|1|A2|A|1679
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6HCJ_018 not in the Motif Atlas
Homologous match to J3_4V88_035
Geometric discrepancy: 0.1916
The information below is about J3_4V88_035
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.1
Basepair signature
cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6HCJ|1|A2|C|1218
6HCJ|1|A2|C|1219
6HCJ|1|A2|A|1220
6HCJ|1|A2|G|1221
*
6HCJ|1|A2|C|1645
6HCJ|1|A2|C|1646
6HCJ|1|A2|A|1647
6HCJ|1|A2|G|1648
6HCJ|1|A2|U|1649
6HCJ|1|A2|A|1650
6HCJ|1|A2|A|1651
*
6HCJ|1|A2|U|1673
6HCJ|1|A2|G|1674
6HCJ|1|A2|A|1675
6HCJ|1|A2|U|1676
6HCJ|1|A2|U|1677
6HCJ|1|A2|A|1678
6HCJ|1|A2|A|1679
6HCJ|1|A2|G|1680

Current chains

Chain A2
18S ribosomal RNA

Nearby chains

Chain G2
Ribosomal protein S5
Chain R2
Ribosomal protein S16
Chain d2
Ribosomal protein S28

Coloring options:


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