J3_6HCJ_018

3D structure

PDB id

6HCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

6HCJ|1|A2|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCJ_018 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1916

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HCJ|1|A2|C|1218
6HCJ|1|A2|C|1219
6HCJ|1|A2|A|1220
6HCJ|1|A2|G|1221
*
6HCJ|1|A2|C|1645
6HCJ|1|A2|C|1646
6HCJ|1|A2|A|1647
6HCJ|1|A2|G|1648
6HCJ|1|A2|U|1649
6HCJ|1|A2|A|1650
6HCJ|1|A2|A|1651
*
6HCJ|1|A2|U|1673
6HCJ|1|A2|G|1674
6HCJ|1|A2|A|1675
6HCJ|1|A2|U|1676
6HCJ|1|A2|U|1677
6HCJ|1|A2|A|1678
6HCJ|1|A2|A|1679
6HCJ|1|A2|G|1680

Current chains

Chain A2

18S ribosomal RNA

Nearby chains

Chain G2

Ribosomal protein S5

Chain R2

Ribosomal protein S16

Chain d2

Ribosomal protein S28