J3_6HCJ_018
3D structure
- PDB id
- 6HCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- 6HCJ|1|A2|A|1679
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCJ_018 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1916
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HCJ|1|A2|C|1218
6HCJ|1|A2|C|1219
6HCJ|1|A2|A|1220
6HCJ|1|A2|G|1221
*
6HCJ|1|A2|C|1645
6HCJ|1|A2|C|1646
6HCJ|1|A2|A|1647
6HCJ|1|A2|G|1648
6HCJ|1|A2|U|1649
6HCJ|1|A2|A|1650
6HCJ|1|A2|A|1651
*
6HCJ|1|A2|U|1673
6HCJ|1|A2|G|1674
6HCJ|1|A2|A|1675
6HCJ|1|A2|U|1676
6HCJ|1|A2|U|1677
6HCJ|1|A2|A|1678
6HCJ|1|A2|A|1679
6HCJ|1|A2|G|1680
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain G2
- Ribosomal protein S5
- Chain R2
- Ribosomal protein S16
- Chain d2
- Ribosomal protein S28
Coloring options: