J3_6HCQ_006

3D structure

PDB id

6HCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit collided di-ribosome (collided monosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6HCQ|1|51|U|2788, 6HCQ|1|51|A|2789

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HCQ_006 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.3106

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6HCQ|1|51|G|2402
6HCQ|1|51|A|2403
6HCQ|1|51|A|2404
6HCQ|1|51|G|2405
*
6HCQ|1|51|C|2785
6HCQ|1|51|C|2786
6HCQ|1|51|A|2787
6HCQ|1|51|U|2788
6HCQ|1|51|A|2789
6HCQ|1|51|U|2790
6HCQ|1|51|C|2791
*
6HCQ|1|51|G|2800
6HCQ|1|51|U|2801
6HCQ|1|51|C|2802

Current chains

Chain 51

28S ribosomal RNA

Nearby chains

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain l3

eL39