J3_6HCQ_016
3D structure
- PDB id
- 6HCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit collided di-ribosome (collided monosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.5 Å
Loop
- Sequence
- AUUC*GGACCAGAGC*GCAUUU
- Length
- 20 nucleotides
- Bulged bases
- 6HCQ|1|A2|G|991
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HCQ_016 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.5286
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6HCQ|1|A2|A|938
6HCQ|1|A2|U|939
6HCQ|1|A2|U|940
6HCQ|1|A2|C|941
*
6HCQ|1|A2|G|985
6HCQ|1|A2|G|986
6HCQ|1|A2|A|987
6HCQ|1|A2|C|988
6HCQ|1|A2|C|989
6HCQ|1|A2|A|990
6HCQ|1|A2|G|991
6HCQ|1|A2|A|992
6HCQ|1|A2|G|993
6HCQ|1|A2|C|994
*
6HCQ|1|A2|G|999
6HCQ|1|A2|C|1000
6HCQ|1|A2|A|1001
6HCQ|1|A2|U|1002
6HCQ|1|A2|U|1003
6HCQ|1|A2|U|1004
Current chains
- Chain A2
- 18S ribosomal RNA
Nearby chains
- Chain C2
- 40S ribosomal protein S3a
- Chain O2
- uS15
- Chain P2
- uS11
- Chain b2
- eS26
- Chain p3
- eL43
Coloring options: