J3_6HD7_015
3D structure
- PDB id
- 6HD7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-NatA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAU*AGAUGUA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 6HD7|1|1|U|3319
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HD7_015 not in the Motif Atlas
- Geometric match to J3_5TBW_069
- Geometric discrepancy: 0.2351
- The information below is about J3_5TBW_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_42762.1
- Basepair signature
- cWW-cWW-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6HD7|1|1|C|3298
6HD7|1|1|A|3299
6HD7|1|1|U|3300
*
6HD7|1|1|A|3314
6HD7|1|1|G|3315
6HD7|1|1|A|3316
6HD7|1|1|U|3317
6HD7|1|1|G|3318
6HD7|1|1|U|3319
6HD7|1|1|A|3320
*
6HD7|1|1|U|3387
6HD7|1|1|C|3388
6HD7|1|1|U|3389
6HD7|1|1|G|3390
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain F
- 60S ribosomal protein L3
- Chain R
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L31-A
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