J3_6HRM_005
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_005 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1485
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|U|943
6HRM|1|1|G|944
6HRM|1|1|G|945
6HRM|1|1|A|946
*
6HRM|1|1|U|1235
6HRM|1|1|A|1236
6HRM|1|1|C|1237
*
6HRM|1|1|G|1337
6HRM|1|1|G|1338
6HRM|1|1|A|1339
6HRM|1|1|A|1340
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain n
- 30S ribosomal protein S9
- Chain r
- 30S ribosomal protein S13
Coloring options: