J3_6HRM_020

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HRM_020 not in the Motif Atlas

Geometric match to J3_5J7L_041

Geometric discrepancy: 0.083

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|C|2804
6HRM|1|1|G|2805
6HRM|1|1|G|2806
6HRM|1|1|A|2807
6HRM|1|1|A|2808
6HRM|1|1|G|2809
*
6HRM|1|1|C|3131
6HRM|1|1|A|3132
6HRM|1|1|G|3133
*
6HRM|1|1|C|3145
6HRM|1|1|A|3146
6HRM|1|1|A|3147
6HRM|1|1|G|3148

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains