J3_6HRM_021
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6HRM|1|1|A|3115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_021 not in the Motif Atlas
- Geometric match to J3_7A0S_007
- Geometric discrepancy: 0.1311
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|C|2812
6HRM|1|1|A|2813
6HRM|1|1|A|2814
6HRM|1|1|G|2815
*
6HRM|1|1|C|3111
6HRM|1|1|C|3112
6HRM|1|1|C|3113
6HRM|1|1|A|3114
6HRM|1|1|A|3115
6HRM|1|1|A|3116
6HRM|1|1|C|3117
*
6HRM|1|1|G|3126
6HRM|1|1|U|3127
6HRM|1|1|G|3128
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L34
Coloring options: