J3_6HRM_027
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6HRM|1|1|C|48, 6HRM|1|1|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HRM_027 not in the Motif Atlas
- Homologous match to J3_5J7L_050
- Geometric discrepancy: 0.0933
- The information below is about J3_5J7L_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|G|46
6HRM|1|1|C|47
6HRM|1|1|C|48
6HRM|1|1|U|49
6HRM|1|1|A|50
6HRM|1|1|A|51
6HRM|1|1|C|52
*
6HRM|1|1|G|359
6HRM|1|1|G|360
6HRM|1|1|G|361
6HRM|1|1|G|362
6HRM|1|1|A|363
6HRM|1|1|A|364
6HRM|1|1|U|365
6HRM|1|1|A|366
6HRM|1|1|U|367
*
6HRM|1|1|A|393
6HRM|1|1|G|394
6HRM|1|1|C|395
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain q
- 30S ribosomal protein S12
- Chain u
- 30S ribosomal protein S16
Coloring options: