J3_6HRM_036

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HRM_036 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.0785

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|G|2930
6HRM|1|1|G|2931
6HRM|1|1|G|2932
6HRM|1|1|A|2933
6HRM|1|1|C|2934
6HRM|1|1|G|2935
*
6HRM|1|1|C|3070
6HRM|1|1|C|3071
*
6HRM|1|1|G|3074
6HRM|1|1|A|3075
6HRM|1|1|A|3076
6HRM|1|1|A|3077
6HRM|1|1|A|3078
6HRM|1|1|G|3079
6HRM|1|1|C|3080

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2