J3_6HTQ_025
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6HTQ|1|A|U|34, 6HTQ|1|A|U|495, 6HTQ|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HTQ_025 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.131
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6HTQ|1|A|C|32
6HTQ|1|A|U|33
6HTQ|1|A|U|34
6HTQ|1|A|G|35
*
6HTQ|1|A|C|492
6HTQ|1|A|G|493
6HTQ|1|A|A|494
6HTQ|1|A|U|495
6HTQ|1|A|A|496
6HTQ|1|A|G|497
6HTQ|1|A|U|498
6HTQ|1|A|G|499
6HTQ|1|A|A|500
6HTQ|1|A|A|501
6HTQ|1|A|C|502
6HTQ|1|A|C|503
6HTQ|1|A|A|504
6HTQ|1|A|G|505
6HTQ|1|A|U|506
6HTQ|1|A|A|507
6HTQ|1|A|C|508
*
6HTQ|1|A|G|515
6HTQ|1|A|G|516
6HTQ|1|A|A|517
6HTQ|1|A|A|518
6HTQ|1|A|A|519
6HTQ|1|A|G|520
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
Coloring options: