J3_6HTQ_042

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HTQ_042 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1164

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HTQ|1|A|G|1470
6HTQ|1|A|G|1471
6HTQ|1|A|G|1472
6HTQ|1|A|A|1473
6HTQ|1|A|C|1474
6HTQ|1|A|G|1475
*
6HTQ|1|A|C|1612
6HTQ|1|A|C|1613
*
6HTQ|1|A|G|1616
6HTQ|1|A|A|1617
6HTQ|1|A|A|1618
6HTQ|1|A|A|1619
6HTQ|1|A|A|1620
6HTQ|1|A|G|1621
6HTQ|1|A|C|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2