J3_6I7O_017
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6I7O|1|2b|C|934
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_017 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0994
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|2b|A|881
6I7O|1|2b|U|882
6I7O|1|2b|C|883
6I7O|1|2b|A|884
*
6I7O|1|2b|U|928
6I7O|1|2b|A|929
6I7O|1|2b|A|930
6I7O|1|2b|C|931
6I7O|1|2b|U|932
6I7O|1|2b|A|933
6I7O|1|2b|C|934
6I7O|1|2b|U|935
6I7O|1|2b|G|936
*
6I7O|1|2b|C|943
6I7O|1|2b|A|944
6I7O|1|2b|U|945
6I7O|1|2b|U|946
6I7O|1|2b|U|947
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Qb
- 40S ribosomal protein S1-A
- Chain XT
- 60S ribosomal protein L43-A
- Chain Yb
- 40S ribosomal protein S13
- Chain Zb
- 40S ribosomal protein S14-B
- Chain eb
- 40S ribosomal protein S26-B
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