J3_6I7O_020
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_020 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.1142
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6I7O|1|2b|U|1168
6I7O|1|2b|G|1169
6I7O|1|2b|G|1170
6I7O|1|2b|A|1171
*
6I7O|1|2b|U|1468
6I7O|1|2b|A|1469
6I7O|1|2b|C|1470
*
6I7O|1|2b|G|1574
6I7O|1|2b|G|1575
6I7O|1|2b|A|1576
6I7O|1|2b|A|1577
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Bb
- 40S ribosomal protein S5
- Chain Fb
- 40S ribosomal protein S16-A
- Chain Hb
- 40S ribosomal protein S18-A
- Chain Ib
- 40S ribosomal protein S19-A
- Chain mb
- Transfer RNA; tRNA
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