J3_6I7O_022
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases (A, C, G, U)
- 1217A, 1445G
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_022 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1247
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|2b|C|1215
6I7O|1|2b|C|1216
6I7O|1|2b|A|1217
6I7O|1|2b|G|1218
6I7O|1|2b|A|1219
6I7O|1|2b|C|1220
*
6I7O|1|2b|G|1263
6I7O|1|2b|G|1264
6I7O|1|2b|G|1265
6I7O|1|2b|U|1266
6I7O|1|2b|G|1267
*
6I7O|1|2b|U|1442
6I7O|1|2b|U|1443
6I7O|1|2b|A|1444
6I7O|1|2b|G|1445
6I7O|1|2b|A|1446
6I7O|1|2b|C|1447
6I7O|1|2b|G|1448
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Cb
- 40S ribosomal protein S10-A
- Chain Nb
- Ubiquitin-40S ribosomal protein S31
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