J3_6I7O_022

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases (A, C, G, U)

1217A, 1445G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_022 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1247

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6I7O|1|2b|C|1215
6I7O|1|2b|C|1216
6I7O|1|2b|A|1217
6I7O|1|2b|G|1218
6I7O|1|2b|A|1219
6I7O|1|2b|C|1220
*
6I7O|1|2b|G|1263
6I7O|1|2b|G|1264
6I7O|1|2b|G|1265
6I7O|1|2b|U|1266
6I7O|1|2b|G|1267
*
6I7O|1|2b|U|1442
6I7O|1|2b|U|1443
6I7O|1|2b|A|1444
6I7O|1|2b|G|1445
6I7O|1|2b|A|1446
6I7O|1|2b|C|1447
6I7O|1|2b|G|1448

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Cb

40S ribosomal protein S10-A

Chain Nb

Ubiquitin-40S ribosomal protein S31