J3_6I7O_030

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6I7O|1|BQ|A|817, 6I7O|1|BQ|G|924

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_030 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.0866

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|U|814
6I7O|1|BQ|G|815
6I7O|1|BQ|A|816
6I7O|1|BQ|A|817
6I7O|1|BQ|C|818
6I7O|1|BQ|U|819
6I7O|1|BQ|A|820
*
6I7O|1|BQ|U|905
6I7O|1|BQ|A|906
6I7O|1|BQ|G|907
*
6I7O|1|BQ|C|923
6I7O|1|BQ|G|924
6I7O|1|BQ|A|925
6I7O|1|BQ|A|926

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AQ

60S ribosomal protein L15-A

Chain AW

60S ribosomal protein L2-A