J3_6I7O_032

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

6I7O|1|BQ|A|1065, 6I7O|1|BQ|U|1094, 6I7O|1|BQ|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_032 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.3241

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_09667.1

Basepair signature

cWW-cWW-F-F-cSS-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|BQ|U|986
6I7O|1|BQ|U|987
*
6I7O|1|BQ|A|1062
6I7O|1|BQ|G|1063
6I7O|1|BQ|A|1064
6I7O|1|BQ|A|1065
6I7O|1|BQ|G|1066
*
6I7O|1|BQ|C|1092
6I7O|1|BQ|A|1093
6I7O|1|BQ|U|1094
6I7O|1|BQ|U|1095
6I7O|1|BQ|U|1096
6I7O|1|BQ|G|1097
6I7O|1|BQ|A|1098

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BJ

60S ribosomal protein L21-A

Chain BO

60S ribosomal protein L7-A