J3_6I7O_048
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6I7O|1|YQ|A|817, 6I7O|1|YQ|G|924
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_048 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0983
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6I7O|1|YQ|U|814
6I7O|1|YQ|G|815
6I7O|1|YQ|A|816
6I7O|1|YQ|A|817
6I7O|1|YQ|C|818
6I7O|1|YQ|U|819
6I7O|1|YQ|A|820
*
6I7O|1|YQ|U|905
6I7O|1|YQ|A|906
6I7O|1|YQ|G|907
*
6I7O|1|YQ|C|923
6I7O|1|YQ|G|924
6I7O|1|YQ|A|925
6I7O|1|YQ|A|926
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XL
- 60S ribosomal protein L39
- Chain XQ
- 60S ribosomal protein L15-A
- Chain XW
- 60S ribosomal protein L2-A
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