J3_6I7O_053
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6I7O|1|YQ|U|1840, 6I7O|1|YQ|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6I7O_053 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1065
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|YQ|G|1488
6I7O|1|YQ|A|1489
6I7O|1|YQ|A|1490
6I7O|1|YQ|A|1491
*
6I7O|1|YQ|U|1837
6I7O|1|YQ|G|1838
6I7O|1|YQ|A|1839
6I7O|1|YQ|U|1840
6I7O|1|YQ|A|1841
6I7O|1|YQ|A|1842
6I7O|1|YQ|C|1843
*
6I7O|1|YQ|G|1852
6I7O|1|YQ|U|1853
6I7O|1|YQ|C|1854
Current chains
- Chain YQ
- 25S ribosomal RNA
Nearby chains
- Chain XF
- 60S ribosomal protein L37-A
- Chain XL
- 60S ribosomal protein L39
- Chain YN
- 60S ribosomal protein L34-A
- Chain YS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: