J3_6I7O_055

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

6I7O|1|YQ|A|1642

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I7O_055 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1743

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6I7O|1|YQ|C|1631
6I7O|1|YQ|A|1632
*
6I7O|1|YQ|U|1641
6I7O|1|YQ|A|1642
6I7O|1|YQ|A|1643
6I7O|1|YQ|C|1644
6I7O|1|YQ|U|1645
*
6I7O|1|YQ|A|1810
6I7O|1|YQ|G|1811

Current chains

Chain YQ

25S ribosomal RNA

Nearby chains

Chain XI

60S ribosomal protein L38

Chain XN

60S ribosomal protein L27-A

Chain YN

60S ribosomal protein L34-A