J3_6IP5_007
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 6IP5|1|1A|A|2396, 6IP5|1|1A|U|2398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP5_007 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.1401
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|1A|C|2393
6IP5|1|1A|G|2394
6IP5|1|1A|A|2395
6IP5|1|1A|A|2396
6IP5|1|1A|G|2397
6IP5|1|1A|U|2398
6IP5|1|1A|G|2399
*
6IP5|1|1A|C|2805
6IP5|1|1A|A|2806
6IP5|1|1A|A|2807
*
6IP5|1|1A|U|2819
6IP5|1|1A|C|2820
6IP5|1|1A|U|2821
6IP5|1|1A|G|2822
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2L
- 60S ribosomal protein L19
- Chain 2a
- 60S ribosomal protein L34
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