J3_6IP6_004
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6IP6|1|1A|A|1534, 6IP6|1|1A|G|1641
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP6_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1451
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6IP6|1|1A|U|1531
6IP6|1|1A|G|1532
6IP6|1|1A|A|1533
6IP6|1|1A|A|1534
6IP6|1|1A|C|1535
6IP6|1|1A|U|1536
6IP6|1|1A|A|1537
*
6IP6|1|1A|U|1622
6IP6|1|1A|A|1623
6IP6|1|1A|G|1624
*
6IP6|1|1A|C|1640
6IP6|1|1A|G|1641
6IP6|1|1A|A|1642
6IP6|1|1A|A|1643
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2H
- 60S ribosomal protein L15
- Chain 2d
- 60S ribosomal protein L37
- Chain 2f
- 60S ribosomal protein L39
- Chain zx
- nascent peptide
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