J3_6IP6_022
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP6_022 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.203
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6IP6|1|2m|U|1225
6IP6|1|2m|G|1226
6IP6|1|2m|G|1227
6IP6|1|2m|A|1228
*
6IP6|1|2m|U|1530
6IP6|1|2m|A|1531
6IP6|1|2m|C|1532
*
6IP6|1|2m|G|1638
6IP6|1|2m|G|1639
6IP6|1|2m|A|1640
6IP6|1|2m|A|1641
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 20
- 40S ribosomal protein S19
- Chain 2r
- 40S ribosomal protein S5
- Chain 2x
- 40S ribosomal protein S16
- Chain 2z
- 40S ribosomal protein S18
- Chain zy
- Transfer RNA; tRNA
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