J3_6IP8_006
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 6IP8|1|1A|A|1805, 6IP8|1|1A|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_006 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.4275
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6IP8|1|1A|U|1726
6IP8|1|1A|U|1727
*
6IP8|1|1A|A|1802
6IP8|1|1A|G|1803
6IP8|1|1A|A|1804
6IP8|1|1A|A|1805
6IP8|1|1A|G|1806
*
6IP8|1|1A|C|1832
6IP8|1|1A|G|1833
6IP8|1|1A|U|1834
6IP8|1|1A|G|1835
6IP8|1|1A|G|1836
6IP8|1|1A|A|1837
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2A
- 60S ribosomal protein L7
- Chain 2N
- 60S ribosomal protein L21
- Chain 2V
- 60S ribosomal protein L29
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