J3_6IP8_013
3D structure
- PDB id
- 6IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6IP8|1|1A|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6IP8_013 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1894
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6IP8|1|1A|C|4241
6IP8|1|1A|U|4242
6IP8|1|1A|C|4243
*
6IP8|1|1A|G|4267
6IP8|1|1A|A|4268
6IP8|1|1A|G|4269
*
6IP8|1|1A|C|4278
6IP8|1|1A|A|4279
6IP8|1|1A|A|4280
6IP8|1|1A|A|4281
6IP8|1|1A|A|4282
6IP8|1|1A|G|4283
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1G
- 60S ribosomal protein L5
- Chain 2E
- 60S ribosomal protein L11
- Chain 2N
- 60S ribosomal protein L21
- Chain zy
- Transfer RNA; tRNA
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